Elucidating the Space of Enzymatic Reaction: A Unified Benchmark and Pretrained Model

arXiv:2610.11694 · q-bio.QM, cs.AI · Submitted 2026-10-08 · Read on arXiv

q-bio.QM, cs.AI

Submitted: 2026-10-08

Updated: 2026-10-08

Terminology

• Benchmark — 44× in this paper · explained in 2 episodes
• Accuracy — 14× in this paper · explained in 1 episode
• Transformer — 13× in this paper · explained in 2 episodes
• Generalization — 9× in this paper · explained in 13 episodes
• Molecule Library-Constrained Decoding — 7× in this paper
• Ablation — 6× in this paper · explained in 1 episode
• Adam — 4× in this paper · explained in 2 episodes
• Provenance — 4× in this paper · explained in 3 episodes
• Consistency — 3× in this paper · explained in 3 episodes
• Contrastive Learning — 3× in this paper · explained in 5 episodes
• Enzyme Commission — 3× in this paper
• Fine-Tuning — 3× in this paper · explained in 5 episodes
• Transfer Learning — 3× in this paper · explained in 10 episodes
• Ablation study — 2× in this paper · explained in 1 episode
• Benchmarking — 2× in this paper · explained in 3 episodes
• Embeddings — 2× in this paper · explained in 2 episodes
• Tokenization — 2× in this paper · explained in 2 episodes
• Two-stage training — 2× in this paper · explained in 2 episodes
• Adaptation — 1× in this paper · explained in 1 episode
• Core — 1× in this paper · explained in 2 episodes
• Domain Adaptation — 1× in this paper · explained in 5 episodes
• Downstream Tasks — 1× in this paper · explained in 2 episodes
• Foundation Model — 1× in this paper · explained in 3 episodes
• Generative Model — 1× in this paper · explained in 2 episodes
• Generative Models — 1× in this paper · explained in 2 episodes
• Structural Constraints — 1× in this paper · explained in 2 episodes
• alpha — 1× in this paper · explained in 1 episode

Sources

• SciReasoner: Laying the Scientific Reasoning Ground Across Disciplines

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