Can LLMs Reliably Annotate Bioassay Metadata to Improve Data Readiness?

arXiv:2610.01616 · cs.CL, cs.AI, cs.DB, q-bio.QM · Submitted 2026-10-01 · Read on arXiv

cs.CL, cs.AI, cs.DB, q-bio.QM

Submitted: 2026-10-01

Updated: 2026-10-01

Terminology

Ontology — 25× in this paper · explained in 2 episodes
Benchmark — 4× in this paper · explained in 2 episodes
Ablation — 3× in this paper · explained in 1 episode
Accuracy — 3× in this paper · explained in 1 episode
Alignment — 3× in this paper · explained in 1 episode
Consistency — 2× in this paper · explained in 3 episodes
Foundation Model — 2× in this paper · explained in 3 episodes
Foundation Models — 2× in this paper · explained in 7 episodes
Trace — 2× in this paper · explained in 2 episodes
Verification — 2× in this paper · explained in 2 episodes
Activity-Based Protein Profiling — 1× in this paper
Calibration — 1× in this paper · explained in 7 episodes
Core — 1× in this paper · explained in 2 episodes
Grounding — 1× in this paper · explained in 3 episodes
Large Language Models (LLMs) — 1× in this paper · explained in 6 episodes
NIH Molecular Libraries Program — 1× in this paper
Named Entity Recognition (NER) — 1× in this paper · explained in 2 episodes
Reasoning Traces — 1× in this paper · explained in 3 episodes

Sources

RELATE: Relation Extraction in Biomedical Abstracts with LLMs and Ontology Constraints

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