StabilityArc: Decoding Protein Sequence Embeddings into Generalizable Stability Landscapes

arXiv:2610.00742 · q-bio.BM, cs.LG · Submitted 2026-09-30 · Read on arXiv

q-bio.BM, cs.LG

Submitted: 2026-09-30

Updated: 2026-09-30

Code: https://github.com/AaronFeller/StabilityArc

Terminology

• Embeddings — 12× in this paper · explained in 2 episodes
• Transformer — 9× in this paper · explained in 2 episodes
• Adaptation — 4× in this paper · explained in 1 episode
• AUROC — 3× in this paper · explained in 2 episodes
• Accuracy — 3× in this paper · explained in 1 episode
• Adam — 3× in this paper · explained in 2 episodes
• Benchmark — 3× in this paper · explained in 2 episodes
• Decode — 2× in this paper · explained in 2 episodes
• Benchmarking — 1× in this paper · explained in 3 episodes
• Frustration — 1× in this paper · explained in 2 episodes
• Generative Model — 1× in this paper · explained in 2 episodes
• Generative Models — 1× in this paper · explained in 2 episodes
• Physical Constraints — 1× in this paper · explained in 7 episodes
• World Model — 1× in this paper · explained in 7 episodes
• alpha — 1× in this paper · explained in 1 episode

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