Fragment Path Complex Networks for Viral Genome Classification

arXiv:2609.38651 · q-bio.GN · Submitted 2026-09-29 · Read on arXiv

q-bio.GN

Submitted: 2026-09-29

Updated: 2026-09-29

Code: https://github.com/wachiraa26/FPCN

Terminology

• Accuracy — 21× in this paper · explained in 1 episode
• Benchmark — 16× in this paper · explained in 2 episodes
• Embeddings — 15× in this paper · explained in 2 episodes
• Alignment — 14× in this paper · explained in 1 episode
• Fragment Path Complex Networks — 6× in this paper
• Robustness — 4× in this paper · explained in 5 episodes
• Ablation — 3× in this paper · explained in 1 episode
• F1 Score — 3× in this paper · explained in 3 episodes
• Ablation study — 2× in this paper · explained in 1 episode
• Clustering — 2× in this paper · explained in 2 episodes
• Persistent Homology — 2× in this paper · explained in 3 episodes
• Transformer — 2× in this paper · explained in 2 episodes
• Attention Mechanism — 1× in this paper · explained in 2 episodes
• Computational Biology — 1× in this paper · explained in 2 episodes
• Foundation Model — 1× in this paper · explained in 3 episodes
• Generalization — 1× in this paper · explained in 13 episodes
• Generative Modeling — 1× in this paper · explained in 3 episodes
• Representation Learning — 1× in this paper · explained in 2 episodes

Sources

• Virus genome sequence classification using features based on nucleotides, words and compression
• Simplicial Neural Networks
• UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction
• Persistent Path Homology of Directed Networks

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