Automatic Generation of Expert-Level Neuron Segmentation Masks from Fluorescence Microscopy Images for Non-Invasive Deep Learning Analysis of Phase-Contrast Images

arXiv:2609.34464 · q-bio.NC · Submitted 2026-09-28 · Read on arXiv

q-bio.NC

Submitted: 2026-09-28

Updated: 2026-09-28

Code: https://github.com/mhamilton723/STEGO

Terminology

• Segmentation Masks — 11× in this paper · explained in 2 episodes
• Accuracy — 6× in this paper · explained in 1 episode
• Generalizability — 2× in this paper · explained in 6 episodes
• Matthews Correlation Coefficient — 2× in this paper
• Affective Computing — 1× in this paper · explained in 1 episode
• Alignment — 1× in this paper · explained in 1 episode
• Benchmark — 1× in this paper · explained in 2 episodes
• Convolutional Neural Networks (CNNs) — 1× in this paper · explained in 2 episodes
• Downstream Tasks — 1× in this paper · explained in 2 episodes
• External Validation — 1× in this paper · explained in 2 episodes
• Generative AI — 1× in this paper · explained in 2 episodes
• Homogeneity — 1× in this paper · explained in 2 episodes
• Instance Segmentation — 1× in this paper · explained in 3 episodes
• Redundancy — 1× in this paper · explained in 2 episodes
• Robustness — 1× in this paper · explained in 5 episodes

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