AmbiModBench: Benchmarking Gene Perturbation Prediction Beyond Shared Responses

arXiv:2609.32527 · cs.AI, cs.LG, q-bio.GN, stat.AP · Submitted 2026-09-26 · Read on arXiv

cs.AI, cs.LG, q-bio.GN, stat.AP

Submitted: 2026-09-26

Updated: 2026-09-26

Terminology

• Benchmark — 28× in this paper · explained in 2 episodes
• Calibration — 23× in this paper · explained in 7 episodes
• AmbiModBench — 11× in this paper · explained in 1 episode
• Embeddings — 9× in this paper · explained in 2 episodes
• Benchmarking — 8× in this paper · explained in 3 episodes
• Generative AI — 5× in this paper · explained in 2 episodes
• Ablation — 4× in this paper · explained in 1 episode
• Generalization — 3× in this paper · explained in 13 episodes
• Wasserstein Distance — 3× in this paper · explained in 4 episodes
• Regularization — 2× in this paper · explained in 3 episodes
• Accuracy — 1× in this paper · explained in 1 episode
• Alignment — 1× in this paper · explained in 1 episode
• Cosine Similarity — 1× in this paper · explained in 3 episodes
• Foundation Model — 1× in this paper · explained in 3 episodes
• Foundation Models — 1× in this paper · explained in 7 episodes
• Latent Space — 1× in this paper · explained in 7 episodes
• Mode Collapse — 1× in this paper · explained in 2 episodes
• Principal Component Analysis (PCA) — 1× in this paper · explained in 4 episodes
• Robustness — 1× in this paper · explained in 5 episodes
• Zero-Shot Generalization — 1× in this paper · explained in 5 episodes

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