GyroNovo: Error-Guided Fragment Imputation with Mass-Aware Attention for De Novo Peptide Sequencing

arXiv:2609.30542 · cs.LG · Submitted 2026-09-24 · Read on arXiv

cs.LG

Submitted: 2026-09-24

Updated: 2026-09-24

Code: https://github.com/UBC-NLP/gyronovo

Terminology

• Transformer — 10× in this paper · explained in 2 episodes
• Embeddings — 6× in this paper · explained in 2 episodes
• AUC — 5× in this paper · explained in 2 episodes
• Ablation — 4× in this paper · explained in 1 episode
• Ablation study — 3× in this paper · explained in 1 episode
• Robustness — 3× in this paper · explained in 5 episodes
• Benchmark — 2× in this paper · explained in 2 episodes
• Decode — 2× in this paper · explained in 2 episodes
• Accuracy — 1× in this paper · explained in 1 episode
• Adaptation — 1× in this paper · explained in 1 episode
• Attention Mechanism — 1× in this paper · explained in 2 episodes
• Benchmarking — 1× in this paper · explained in 3 episodes
• Computational Biology — 1× in this paper · explained in 2 episodes
• Computational overhead — 1× in this paper · explained in 2 episodes
• Contrastive Learning — 1× in this paper · explained in 5 episodes
• Latent Representation — 1× in this paper · explained in 2 episodes
• Latent Representations — 1× in this paper · explained in 3 episodes
• Representation Learning — 1× in this paper · explained in 2 episodes

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