Topological Inference for Organoids

arXiv:2609.27668 · q-bio.QM · Submitted 2026-09-23 · Read on arXiv

q-bio.QM

Submitted: 2026-09-23

Updated: 2026-09-23

Code: https://github.com/reddevil0623/organoid_inference

Terminology

• Wasserstein Distance — 15× in this paper · explained in 4 episodes
• Approximate Bayesian Computation — 7× in this paper
• Euler Characteristic Transform — 7× in this paper
• Inverse Problem — 4× in this paper · explained in 2 episodes
• Bayesian Inference — 3× in this paper · explained in 5 episodes
• Computational Biology — 3× in this paper · explained in 2 episodes
• Persistent Homology — 3× in this paper · explained in 3 episodes
• Simulation-based Inference — 2× in this paper · explained in 2 episodes
• Topological Data Analysis (TDA) — 2× in this paper · explained in 2 episodes
• Accuracy — 1× in this paper · explained in 1 episode
• Analysis Engineering and Physical Sciences Research Council — 1× in this paper
• Approximate Approximate Bayesian Computation — 1× in this paper
• Bayesian Framework — 1× in this paper · explained in 3 episodes
• Bayesian Optimization — 1× in this paper · explained in 3 episodes
• Core — 1× in this paper · explained in 2 episodes
• Fidelity — 1× in this paper · explained in 2 episodes
• Robustness — 1× in this paper · explained in 5 episodes
• SAM Phenotype Observation Tool — 1× in this paper
• Theoretical Guarantees — 1× in this paper · explained in 2 episodes

Sources

• Counting voids and filaments: Betti Curves as a Topological Probe for Cosmology
• Multi-objective Bayesian inference in an agent-based model of zebrafish patterns via topological data analysis
• Topological shape transform for thymus structures

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