BreCol: Benchmarking Classical and Deep-Learning Methods for Microbiome-Based Cancer Detection

arXiv:2609.27207 · q-bio.QM, q-bio.GN · Submitted 2026-09-23 · Read on arXiv

q-bio.QM, q-bio.GN

Submitted: 2026-09-23

Updated: 2026-09-23

Code: https://github.com/jedick/BreCol

Terminology

AUC — 49× in this paper · explained in 2 episodes
Abundance — 19× in this paper · explained in 1 episode
Benchmark — 9× in this paper · explained in 2 episodes
Clustering — 8× in this paper · explained in 2 episodes
Embeddings — 6× in this paper · explained in 2 episodes
Benchmarking — 4× in this paper · explained in 3 episodes
Transformer — 4× in this paper · explained in 2 episodes
Foundation Model — 3× in this paper · explained in 3 episodes
Cosine Similarity — 2× in this paper · explained in 3 episodes
Accuracy — 1× in this paper · explained in 1 episode
Aggregation — 1× in this paper · explained in 1 episode
Core — 1× in this paper · explained in 2 episodes
External Validation — 1× in this paper · explained in 2 episodes
Fine-Tuning — 1× in this paper · explained in 5 episodes
Foundation Models — 1× in this paper · explained in 7 episodes
Generalizability — 1× in this paper · explained in 6 episodes
Principal Component Analysis (PCA) — 1× in this paper · explained in 4 episodes
Transformer Architecture — 1× in this paper · explained in 2 episodes

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