Nucleosome simulations suggest mechanisms of electrostatically-driven mesoscale chromatin evolution

arXiv:2609.24907 · cond-mat.soft, q-bio.BM · Submitted 2026-09-21 · Read on arXiv

cond-mat.soft, q-bio.BM

Submitted: 2026-09-21

Updated: 2026-09-21

Terminology

• Clustering — 13× in this paper · explained in 2 episodes
• Core — 11× in this paper · explained in 2 episodes
• Alignment — 10× in this paper · explained in 1 episode
• Boltzmann Equation — 2× in this paper · explained in 2 episodes
• Anisotropy — 1× in this paper · explained in 3 episodes
• Consistency — 1× in this paper · explained in 3 episodes
• Cosine Similarity — 1× in this paper · explained in 3 episodes
• Local Outlier Factor — 1× in this paper
• Physical Constraints — 1× in this paper · explained in 7 episodes
• Principal Component Analysis (PCA) — 1× in this paper · explained in 4 episodes
• Self-consistency — 1× in this paper · explained in 2 episodes

Sources

• UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction
• ChromRec: Self-Assembly of Nucleosomes Driven by Directional Recognition

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