PlainMap: a lightweight, restartable mapping pipeline for ancient and modern DNA

arXiv:2609.18372 · q-bio.GN · Submitted 2026-09-16 · Read on arXiv

q-bio.GN

Submitted: 2026-09-16

Updated: 2026-09-16

Code: https://github.com/BiodiversityExtinction/PlainMap

Terminology

• Alignment — 16× in this paper · explained in 1 episode
• Core — 3× in this paper · explained in 2 episodes
• Accuracy — 2× in this paper · explained in 1 episode
• Consistency — 2× in this paper · explained in 3 episodes
• Benchmark — 1× in this paper · explained in 2 episodes
• Burrows-Wheeler Aligner — 1× in this paper
• Generative AI — 1× in this paper · explained in 2 episodes
• NCBI Sequence Read Archive — 1× in this paper

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