HyCoSeq: Contextual Hyperbolic Representation Learning for Genomic Sequences

arXiv:2609.16925 · cs.LG, q-bio.GN, stat.ML · Submitted 2026-09-15 · Read on arXiv

cs.LG, q-bio.GN, stat.ML

Submitted: 2026-09-15

Updated: 2026-09-15

License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/

Terminology

• Aggregation — 18× in this paper · explained in 1 episode
• Representation Learning — 12× in this paper · explained in 2 episodes
• Benchmark — 7× in this paper · explained in 2 episodes
• Embeddings — 5× in this paper · explained in 2 episodes
• Genomic Benchmarks — 3× in this paper
• Transformer — 3× in this paper · explained in 2 episodes
• Ablation — 2× in this paper · explained in 1 episode
• Core — 2× in this paper · explained in 2 episodes
• Adam — 1× in this paper · explained in 2 episodes
• Alignment — 1× in this paper · explained in 1 episode
• Foundation Model — 1× in this paper · explained in 3 episodes
• Foundation Models — 1× in this paper · explained in 7 episodes
• Hyperbolic Genome Embeddings — 1× in this paper
• Riemannian optimization — 1× in this paper · explained in 2 episodes
• Transposable Elements Benchmark — 1× in this paper

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