Unifying biomedical knowledge in a modern multimodal graph

arXiv:2604.27269 · cs.AI · Submitted 2026-04-29 · Read on arXiv

cs.AI

Submitted: 2026-04-29

Updated: 2026-09-01

Terminology

• Ontology — 95× in this paper · explained in 2 episodes
• Knowledge Graph — 42× in this paper · explained in 7 episodes
• Provenance — 17× in this paper · explained in 4 episodes
• Knowledge graphs — 12× in this paper · explained in 2 episodes
• Alignment — 6× in this paper · explained in 1 episode
• Abstraction — 5× in this paper · explained in 1 episode
• Consistency — 3× in this paper · explained in 3 episodes
• Core — 3× in this paper · explained in 2 episodes
• Human Phenotype Ontology — 3× in this paper
• Benchmark — 2× in this paper · explained in 2 episodes
• Benchmarking — 2× in this paper · explained in 4 episodes
• Comparative Toxicogenomics Database — 2× in this paper
• Data Provenance — 2× in this paper · explained in 2 episodes
• Embeddings — 2× in this paper · explained in 2 episodes
• Graph Construction — 2× in this paper · explained in 3 episodes
• AI Agents — 1× in this paper · explained in 2 episodes
• Biolink with the Gene Ontology — 1× in this paper
• Computational Biology — 1× in this paper · explained in 2 episodes
• Decoupling — 1× in this paper · explained in 2 episodes
• Foundation Model — 1× in this paper · explained in 3 episodes
• Generalization — 1× in this paper · explained in 13 episodes
• HUGO Gene Nomenclature Committee — 1× in this paper
• Instruction Tuning — 1× in this paper · explained in 2 episodes
• Large Language Models (LLMs) — 1× in this paper · explained in 6 episodes
• National Cancer Institute Thesaurus — 1× in this paper
• Orphanet Rare Disease Ontology — 1× in this paper
• RAG — 1× in this paper · explained in 3 episodes
• Representation Learning — 1× in this paper · explained in 2 episodes
• Trace — 1× in this paper · explained in 2 episodes
• Verification — 1× in this paper · explained in 2 episodes

Sources

• Few-shot link prediction via graph neural networks for Covid-19 drug-repurposing
• MEDAKA: Construction of Biomedical Knowledge Graphs Using Large Language Models
• Multi-modal Protein Knowledge Graph Construction and Applications
• Reproducible Domain-Specific Knowledge Graphs in the Life Sciences: a Systematic Literature Review
• Language agents achieve superhuman synthesis of scientific knowledge

Related papers

• MAVEN-T: Reinforced Heterogeneous Distillation for Real-Time Multi-Agent Trajectory Prediction
• Model Discovery Agent: LLM-assisted Bayesian experiment design for data-efficient discovery of mechanistic world models
• The Clinician's Veto: Navigating Trust, Liability, and Uncertainty in Autonomous AI Prescribing
• MindHelper: Closed-Loop Embodied Mental-State Reasoning for Precision Intervention
• Incumbent Advantage: Brand Bias and Cognitive Manipulation Dynamics in LLM Recommendation Systems
• VSAL: A Vision Solver with Adaptive Layouts for Graph Property Detection