EveryQuery: A Promptable Foundation Model for Clinical Prediction Tasks over Electronic Health Records

arXiv:2603.07900 · cs.AI · Submitted 2026-03-09 · Read on arXiv

cs.AI

Submitted: 2026-03-09

Updated: 2026-09-26

Code: https://github.com/mmcdermott/MEDS_EIC_AR

Terminology

• AUROC — 26× in this paper · explained in 2 episodes
• AUC — 24× in this paper · explained in 2 episodes
• Foundation Model — 23× in this paper · explained in 3 episodes
• Foundation Models — 12× in this paper · explained in 7 episodes
• Embeddings — 7× in this paper · explained in 2 episodes
• Transformer — 7× in this paper · explained in 2 episodes
• Aggregation — 4× in this paper · explained in 1 episode
• Generalization — 4× in this paper · explained in 13 episodes
• Benchmark — 3× in this paper · explained in 2 episodes
• Core — 3× in this paper · explained in 2 episodes
• Institutional Review Board — 3× in this paper
• Tokenization — 3× in this paper · explained in 2 episodes
• Accuracy — 2× in this paper · explained in 1 episode
• Adam — 2× in this paper · explained in 2 episodes
• Downstream Tasks — 2× in this paper · explained in 2 episodes
• Fine-Tuning — 2× in this paper · explained in 5 episodes
• Generative Model — 2× in this paper · explained in 2 episodes
• Instruction Tuning — 2× in this paper · explained in 2 episodes
• Representation Learning — 2× in this paper · explained in 2 episodes
• Artificial Intelligence (AI) — 1× in this paper · explained in 2 episodes
• Benchmarking — 1× in this paper · explained in 3 episodes
• Clustering — 1× in this paper · explained in 2 episodes
• Commentary — 1× in this paper · explained in 2 episodes
• Consistency — 1× in this paper · explained in 3 episodes
• Cosine Similarity — 1× in this paper · explained in 3 episodes
• Generative Models — 1× in this paper · explained in 2 episodes
• Linear Probing — 1× in this paper · explained in 2 episodes
• Monte Carlo — 1× in this paper
• Predictive Modeling — 1× in this paper · explained in 2 episodes
• Robustness — 1× in this paper · explained in 5 episodes
• Zero-Shot Transfer — 1× in this paper · explained in 4 episodes

Sources

• Tokenization Tradeoffs in Structured EHR Foundation Models
• Representation Before Training: A Practical Benchmark for Generative Medical Event Model Tokenization

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