JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures

arXiv:2602.17162 · cs.AI, q-bio.GN · Submitted 2026-02-19 · Read on arXiv

cs.AI, q-bio.GN

Submitted: 2026-02-19

Updated: 2026-10-15

Terminology

• Foundation Model — 2× in this paper · explained in 3 episodes
• Foundation Models — 2× in this paper · explained in 7 episodes
• Grounding — 2× in this paper · explained in 3 episodes
• Joint-Embedding Predictive Architecture — 2× in this paper
• Ablation — 1× in this paper · explained in 1 episode
• Ablation Studies — 1× in this paper · explained in 1 episode
• Alignment — 1× in this paper · explained in 1 episode
• Benchmark — 1× in this paper · explained in 2 episodes
• Embeddings — 1× in this paper · explained in 2 episodes
• Latent Space — 1× in this paper · explained in 7 episodes
• Linear Probing — 1× in this paper · explained in 2 episodes
• Model-Agnostic — 1× in this paper · explained in 2 episodes
• Semantic Alignment — 1× in this paper · explained in 4 episodes
• Zero-shot performance — 1× in this paper · explained in 2 episodes

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