Lightning-fast adaptive immune receptor similarity search by symmetric deletion lookup

arXiv:2403.09010 · q-bio.QM, q-bio.GN · Submitted 2024-03-14 · Read on arXiv

q-bio.QM, q-bio.GN

Submitted: 2024-03-14

Updated: 2026-09-22

Code: https://github.com/andim/pyrepseq

Project page: https://nvlabs.github.io/cub

Terminology

• Benchmark — 13× in this paper · explained in 2 episodes
• Benchmarking — 6× in this paper · explained in 3 episodes
• Hamming Distance — 5× in this paper · explained in 2 episodes
• Clustering — 4× in this paper · explained in 2 episodes
• Core — 4× in this paper · explained in 2 episodes
• Algorithmic Improvements — 2× in this paper · explained in 1 episode
• Computational Biology — 2× in this paper · explained in 2 episodes
• Accuracy — 1× in this paper · explained in 1 episode
• Downstream Tasks — 1× in this paper · explained in 2 episodes
• Graphical Processing Units — 1× in this paper

Sources

• Learning Space Partitions for Nearest Neighbor Search

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