UQSA -- An R-Package for Uncertainty Quantification and Sensitivity Analysis for Biochemical Reaction Network Models

arXiv:2308.05527 · q-bio.QM, q-bio.SC · Submitted 2023-08-10 · Read on arXiv

q-bio.QM, q-bio.SC

Submitted: 2023-08-10

Updated: 2026-09-19

Code: https://github.com/icpm-kth/uqsa

Project page: https://icpm-kth.github.io/uqsa

Terminology

• Uncertainty Quantification — 16× in this paper · explained in 8 episodes
• Copula — 9× in this paper · explained in 2 episodes
• Approximate Bayesian Computation — 6× in this paper
• Benchmark — 4× in this paper · explained in 2 episodes
• Calibration — 4× in this paper · explained in 7 episodes
• Core — 4× in this paper · explained in 2 episodes
• Benchmarking — 3× in this paper · explained in 3 episodes
• Fisher Information — 3× in this paper · explained in 3 episodes
• Simplified Manifold Metropolis-Adjusted Langevin Algorithm — 2× in this paper
• Bayesian Framework — 1× in this paper · explained in 3 episodes
• Computational Biology — 1× in this paper · explained in 2 episodes
• Physical Constraints — 1× in this paper · explained in 7 episodes

Sources

• Sensitivity Approximation by the Peano-Baker Series

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